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Diabetes 55:3620-3624, 2006
DOI: 10.2337/db06-0867
© 2006 by the American Diabetes Association
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Brief Genetics Reports

The Krüppel-Like Factor 11 (KLF11) Q62R Polymorphism Is Not Associated With Type 2 Diabetes in 8,676 People

Jose C. Florez1,2,3,4, Richa Saxena1,4, Wendy Winckler5, Noël P. Burtt4, Peter Almgren6, Kristina Bengtsson Boström7, Tiinamaija Tuomi8,9, Daniel Gaudet10, Kristin G. Ardlie11, Mark J. Daly2,4, David Altshuler1,2,3,4,12, Joel N. Hirschhorn4,12,13, and Leif Groop6,8

1 Department of Molecular Biology and Center for Human Genetic Research, Massachusetts General Hospital, Boston, Massachusetts
2 Department of Medicine, Massachusetts General Hospital, Boston, Massachusetts
3 Department of Medicine, Harvard Medical School, Boston, Massachusetts
4 Medical and Population Genetics Program, Broad Institute of Harvard and MIT, Cambridge, Massachusetts
5 Cancer Biology Program, Broad Institute of Harvard and MIT, Cambridge, Massachusetts
6 Department of Endocrinology, University Hospital MAS, Lund University, Malmö, Sweden
7 Department of Clinical Science, University Hospital MAS, Lund University, Malmö, Sweden
8 Department of Medicine, Helsinki University Central Hospital and Research Program for Molecular Medicine, University of Helsinki, Helsinki, Finland
9 Folkhälsan Genetic Institute, Folkhälsan Research Center, Helsinki, Finland
10 University of Montreal Community Genomic Center, Chicoutimi Hospital, Chicoutimi, Quebec, Canada
11 Genomics Collaborative Division, SeraCare LifeSciences, Cambridge, Massachusetts
12 Department of Genetics, Harvard Medical School, Boston, Massachusetts
13 Divisions of Genetics and Endocrinology, Children’s Hospital, Boston, Massachusetts

Address correspondence and reprint requests to Jose C. Florez, Simches Research Building, CPZN 6820, Diabetes Unit/Center for Human Genetic Research, Massachusetts General Hospital, Boston, MA 02114. E-mail: jcflorez{at}partners.org

Abbreviations: AUC, area under the curve; GCI, Genomics Collaborative; OGTT, oral glucose tolerance test; SNP, single nucleotide polymorphism

Krüppel-like factor 11 is a pancreatic transcription factor whose activity induces the insulin gene. A common glutamine-to-arginine change at codon 62 (Q62R) in its gene KLF11 has been recently associated with type 2 diabetes in two independent samples. Q62R and two other rare missense variants (A347S and T220M) were also shown to affect the function of KLF11 in vitro, and insulin levels were lower in carriers of the minor allele at Q62R. We therefore examined their impact on common type 2 diabetes in several family-based and case-control samples of northern-European ancestry, totaling 8,676 individuals. We did not detect the rare A347S and T220M variants in our samples. With respect to Q62R, despite >99% power to detect an association of the previously published magnitude, Q62R was not associated with type 2 diabetes (pooled odds ratio 0.97 [95% CI 0.88–1.08], P = 0.63). In a subset of normoglycemic individuals, we did not observe significant differences in various insulin traits according to genotype at KLF11 Q62R. We conclude that the KLF11 A347S and T220M mutations do not contribute to increased risk of diabetes in European-derived populations and that the Q62R polymorphism has, at best, a minor effect on diabetes risk.


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Copyright © 2006 by the American Diabetes Association.