Diabetes 53:2301-2309, 2004 © 2004 by the American Diabetes Association, Inc. Peptides From Common Viral and Bacterial Pathogens Can Efficiently Activate Diabetogenic T-Cells
1 Department of Immunology, The Scripps Research Institute, La Jolla, California
Cross-reactivity between an autoantigen and unknown microbial epitopes has been proposed as a molecular mechanism involved in the development of insulin-dependent diabetes (type 1 diabetes). Type 1 diabetes is an autoimmune disease that occurs in humans and the nonobese diabetic (NOD) mouse. BDC2.5 is an islet-specific CD4+ T-cell clone derived from the NOD mouse whose natural target antigen is unknown. A biometrical analysis of screening data from BDC2.5 T-cells and a positional scanning synthetic combinatorial library (PS-SCL) was used to analyze and rank all peptides in public viral and bacterial protein databases and identify potential molecular mimic sequences with predicted reactivity. Selected sequences were synthesized and tested for stimulatory activity with BDC2.5 T-cells. Active peptides were identified, and some of them were also able to stimulate spontaneously activated T-cells derived from young, pre-diabetic NOD mice, indicating that the reactivity of the BDC2.5 T-cell is directed at numerous mouse peptides. Our results provide evidence for their possible role as T-cell ligands involved in the activation of diabetogenic T-cells.
Type 1 diabetes (insulin dependent) is an autoimmune disease that occurs spontaneously in humans and in the experimental nonobese diabetic (NOD) mouse model (1). In both humans and the NOD mouse, there is an inflammatory lymphocytic infiltrate (insulitis) within pancreatic islets accompanied by circulating anti-islet antibodies. The ultimate destruction of the insulin-producing ß-cells is mediated by T-cells, with both CD4+ and CD8+ cells involved in disease development (2,3). There is also a strong genetic component for susceptibility to the disease associated with the major histocompatibility complex (MHC) in humans. Similarly, in the NOD model, it is known that the H-2g7 MHC allele influences the development of type 1 diabetes (4). Cross-reactivity is thought to be a normal feature of the T-cell receptor (TCR) recognition (5,6). This facet of TCR recognition may arise from the overall nature of the repertoire available in an individual. Because only 5% of thymocytes are positively selected in the thymus (7) and T-cell numbers are limited, cross-reactivity may indeed represent economy of scale (8). On the other hand, T-cell cross-reactivity between self and microbial antigens (molecular mimicry) can trigger autoimmunity (9,10). Interestingly, it has been proposed (1012) that T-cell cross-reactivity between ß-cell autoantigens and microbial antigens plays a role in the development of type 1 diabetes. Molecular mimicry between the GAD65 protein and the Coxsackie viral protein P2C (11,13) has been suggested in the pathogenesis of type 1 diabetes. A different Coxsackie viral protein, VP-1, has also been shown to induce T-cells that are cross-reactive for tyrosine phosphatase (insulinoma-associated protein 2/IAR) (14). In the search to identify other potential molecular mimics, it can be difficult to predict which antigenic determinants will be cross-reactive. This is due to the fact that the relevant peptide/MHC conformation can be mimicked by distantly related peptides with no overt sequence homology (15). Positional scanning synthetic combinatorial libraries (PS-SCLs) have been successfully used to identify antigenic determinants cross-recognized by antigen-specific T-cells, as recently reviewed (16). Data generated utilizing clonal T-cells to screen PS-SCL have recently been used (6,17) in a biometric analysis to analyze and rank all peptides in public databases to identify sequences with predicted reactivity.
Following in vitro activation, the CD4+ T-cell clone (TCC), BDC2.5, is diabetogenic in NOD/scid mice (18). Previous studies have shown that BDC2.5 T-cells are specific for an as yet undefined ß-islet granule membrane antigen when presented by the NOD class II MHC H-2g7. The transgenic strain of the NOD mouse that expresses the TCR This report presents the integration of a biometrical analysis that uses the screening data from the biased positional scanning library (19) to analyze and rank peptides from public viral and bacterial protein databases to identify potential molecular mimic sequences with predicted reactivity (17). Groups of these peptides were synthesized and tested for their stimulatory activity with BDC2.5 T-cells. Interestingly, several of the peptides found in viral and bacterial proteins had significant stimulatory activity at 1 µg/ml. These peptides were also able to stimulate proliferative responses in T-cells derived from young, pre-diabetic NOD mice, indicating that their specificities were contained within the NOD T-cell repertoire. Our results suggest that T-cells from NOD mice can respond to a number of microbial antigens, signifying new instigators for the study of autoimmune pathogenesis.
The screening of the decapeptide positional scanning library, together with the biased library that was used for the identification of the BDC2.5 superagonist peptides (19), was used to generate a scoring matrix. A value for each of the 20 amino acids of the decapeptide is derived from mixtures defined with a given amino acid. Based on the assumption of independent and additive contribution of the individual amino acids at each position of a peptide to the peptides activity, the score of each individual peptide of all of the proteins in the public databases was calculated by adding individual stimulatory values of the composing amino acids. In this manner, the biometrical analysis scores all overlapping decapeptides contained in the public protein database Genpept version 117 and identifies those sequences with the highest predicted stimulatory value. NOD/shi, NOD/Lt-scid/scid, and NOD.BDC2.5 TCR-transgenic mice were obtained from the mouse colony maintained at The Scripps Research Institute and were housed in a specific-pathogenfree environment. The generation of the BDC2.5 mouse has been described by others (20). Individual peptides were synthesized by the simultaneous multiple peptide synthesis method (21). Purity and identity of each peptide were characterized using an electrospray mass spectrometer interfaced with a liquid chromatography system.
Culture conditions.
Secondary proliferation and establishment of antigen-specific NOD cell lines.
Determination of half-maximal proliferative response values of peptides.
Anti-MHC assay.
Cross-reactivity of antigen-specific NOD T-cell lines.
Flow cytometry Vß analysis.
Adoptive transfer of activated BDC2.5 cells.
Immunohistochemistry and insulitis indexes.
Blood glucose measurements and diabetes monitoring.
Statistical analysis.
Viral and bacterial sequences trigger proliferative responses in diabetogenic BDC2.5 T-cells. The first goal of this study was to identify potential epitopes from natural proteins that were capable of stimulating diabetogenic BDC2.5 CD4+ T-cells. To do this, the information previously obtained from the screening of the biased sublibrary was used to perform a PS-SCLbased biometric analysis as recently described (17). This analysis allows the results of a PS-SCL screening to be systematically compared with all of the peptides within a given protein database to identify peptide sequences from naturally occurring proteins with predicted stimulatory activity. Interestingly, a number of peptide sequences from bacterial and viral sources were identified. All of the possible overlapping decapeptide sequences in each protein of the database were scored based on a matrix derived from the screening results of a biased PS-SCL with BDC2.5 cells. About 100,000 proteins each of viral and bacterial origin were analyzed, resulting in 2040 million decapeptide sequences being scored per database. The peptides with the highest scores (47 bacterial and 27 viral) were selected for synthesis. These peptides were tested for their stimulatory activity with BDC2.5 T-cells (Fig. 1).
The sequences of the BDC2.5 stimulatory peptides having an SI 3 at 1 µg/ml or an SI 10 at 10 µg/ml are listed in Table 1 with their predicted activity score, protein source, and microorganism of origin. With an SI of 79, a sequence from a hydratase/aldolase PhnE enzyme (TPI 1308-26) found in a Burkholderia species of bacteria was the most active at 1 µg/ml. Sequences from a putative phage virion protein of Neisseria meningitidis (TPI 1308-29), an exopolyphosphatase enzyme found in a Synechocystis species (TPI 1308-33), and a ferrodoxin reductase enzyme from Pseudomonas putida (TPI 1308-24) were the most active bacterial sequences at 1 µg/ml. Interestingly, a peptide sequence from the tegument protein of human herpes simplex virus type I (TPI 1136-7) was the most active viral sequence at 1 µg/ml.
To compare the activity of these compounds with previously identified superagonists, dose-response assays were performed. The most stimulatory peptides were tested by serial dilution in proliferation assays with BDC2.5 splenocytes. As seen in Fig. 2, the EC50 values of these naturally occurring peptide sequences are higher than those for the superagonists (19). The PS-SCLbased biometrical analysis scores and ranks all of the peptides of a given database using a matrix derived from the screening of a PS-SCL. Therefore, the peptides with the highest scores, which were the ones synthesized for this study, do not necessarily have the optimal amino acids at all positions, leading to the identification of naturally occurring sequences with agonist or weak agonist capability. In contrast, the superagonist sequences (19) were derived from the combinations of the defined amino acids of the most active mixtures at each position of the library and did not correspond to any naturally occurring protein sequence in the Genpept version 117 database. Therefore, their stimulation is expected to be optimized compared with naturally occurring peptides.
Stimulation of BDC2.5 T-cells with naturally occurring peptides is dependent on binding to a class II molecule. Sequence and structural modifications can alter the capacity of peptides to bind to the class II complex. Because most of the naturally occurring peptides identified in this study have residues that are different from those present in the superagonists (19), it was important to evaluate whether the capacity of these peptides to trigger proliferative responses with BDC2.5 was also dependent on MHC-TCR binding. To test this, BDC2.5 splenocytes were stimulated in proliferation assays with these peptides in the presence or absence of an antiMHC class II antibody, antiH-2 IAg7 (Fig. 3). In the presence of the blocking antibody and not the isotype control, peptide-induced proliferation was reduced by a range of 64% (P = 0.01) to 96% (P = 0.01) for the viral peptide p1136-7 and bacterial peptide p1308-26, respectively, as well as for the tested superagonist, p1040-31, to 92% (P = 0.01). These results show that the selected identified natural peptides are not acting as superantigens or growth factors to stimulate proliferative responses in autoreactive BDC2.5 T-cells. These peptides are presented in an MHC-restricted fashion that is similar to the majority of cross-reactive peptides that have been found to stimulate TCCs (2224).
Spontaneously activated T-cells from pre-diabetic NOD mice contain subsets that respond to the microorganism sequences. The cross-reactive peptides identified in this study were able to stimulate proliferative responses in BDC2.5 T-cells. BDC2.5 T-cells were originally isolated from diabetic NOD mice (25) and are contained within the autoreactive T-cell pool (26). Therefore to determine whether these naturally occurring specificities were part of the T-cell repertoire from pre-diabetic NOD mice, we looked for the presence of T-cell subsets that respond to these identified ligands. Splenocytes from 9- to 10-week-old female, pre-diabetic mice were cultured with the most active bacterial and viral peptides from the BDC2.5 assays listed in Fig. 2. With the exception of the TPI 1040-31 superagonist, little or no proliferation was observed during the primary proliferation assay period, indicating that responding cells may be present at a low frequency. However, upon secondary stimulation of the same cell populations, proliferative activity was demonstrated in response to six of these sequences (Fig. 4).
To characterize phenotypic features of NOD T-cells stimulated with several of these microbial antigens, a portion of the cells from each well of the secondary proliferation assay protocol was retained for the establishment of antigen-specific T-cell lines. Two antigen-specific cell lines have been established. One is specific for TPI 1308-29, a Neisseria meningitidis phage sequence, and the other is specific for TPI 1308-84, a Sendai virus C' protein sequence. To evaluate the antigen specificity of these lines compared with BDC2.5 cells, they were stimulated with the panel of active sequences listed in Fig. 1, including a 17-mer ovalbumin peptide sequence that is known to bind H-2 Ig7 as a negative control (27). Interestingly, although the 1308-84 cell line (Fig. 5A) recognizes several of the other active peptide sequences, the 1308-29 cell line (Fig. 5B) appears to recognize only the peptide that was used for expansion as well as the superagonist. Neither cell line recognized the negative control. When the TCR used by these two cell lines was characterized, it was found that the Vß8.1/8.2 TCR chain was almost exclusively selected in this response (Fig. 6), although a smaller percentage of the 1308-29 cells contain that particular Vß chain. Interestingly, in experimental allergic encephalomyelitis, an animal model for the autoimmune disease multiple sclerosis, the Vß8.2 TCR chain is also known to be the primary TCR V gene used by both the B10.PL and PL/J mouse T-cell repertoires directed against the immunodominant myelin basic protein epitope involved in the disease (28). These results show that even though both cross-reactive peptides are able to stimulate BDC2.5 cells, each of them expands a unique set of NOD T-cells.
Adoptive transfer of activated BDC2.5 T-cells with cross-reactive peptide 1308-84 triggers diabetes in NOD/scid recipients. NOD/scid recipients become diabetic when they receive BDC2.5 T-cells stimulated with a superagonist peptide (19). To determine whether stimulation with the naturally occurring peptides identified in this study results in the activation of pathogenic capacity, NOD/scid mice were transferred with BDC2.5 cells that had been cultured for 3 days in the presence of the p1308-84 peptide derived from the murine Sendai virus. On the sixth day after transfer, homing of p1308-84stimulated BDC2.5 T-cells to the pancreas of NOD/scid mice was significantly accelerated compared with NOD/scid mice transferred with nonstimulated cells. One hundred percent of islets were destroyed and blood glucose levels were >300 mg/dl in the NOD/scid recipients of peptide-stimulated cells, whereas only 24% of the islets in control mice were destroyed during this time (P = 0.0013), and none of these mice developed diabetes (Table 2). It is evident from these results that stimulation of cells with this natural viral mimotope was able to transfer disease in a rapid and aggressive fashion.
Type 1 diabetes results from a combination of genetic, immunologic, and environmental factors. T-cell cross-reactivity to ß-cell autoantigens and unknown microbial epitopes has been proposed (29,30) as a molecular mechanism for the breakdown of immunologic tolerance and the subsequent appearance of T-cell autoreactivity. However, there are only limited examples of microbial agents linked to autoimmune pathogenicity (24,3136). Our study demonstrates that antigens from common human and mice pathogens can activate T-cells arising within a spontaneous autoimmune environment. The use of the PS-SCLbased biometrical analysis to identify ligands of clones of unknown specificity has been validated in previously published reports (24,37). It is worth noting that despite sharing the same P4W6M9 motif present in the superagonist peptides (19), these ligands are less stimulatory for BDC2.5 T-cells, indicating that other positions in the decapeptide may play a role in T-cell activation. Of the 72 peptides synthesized with the P4W6M9 motif, only 10 had an SI >3 at 1 µg/ml, indicating that the presence of this particular motif does not guarantee superagonist levels of activity. Some of these active peptides are derived from proteins of pathogenic bacteria, Neisseria meningitidis, a known human pathogen, and Alcaligenes faecalis, a potential human pathogen. The most active peptides of viral origin are derived from a protein of the human herpes simplex type 1 virus (p1136-7) and one derived from the murine Sendai virus (p1308-84). The Sendai virus is a major respiratory pathogen of mice. This paramyxovirus shares sequence homology with the human pathogen parainfluenza type 1 virus, which is responsible for respiratory disease in infants and children (38). To determine whether the identified peptides could be naturally processed epitopes, the source proteins for these two peptides as well as the other NOD stimulatory peptides (Fig. 4) were analyzed using asparaginyl endopeptidase, a cysteine protease known to be prevalent in APCs (39). This enzyme is now thought to be the dominant enzyme capable of initiating MHC class IIrestricted antigen processing and has been extensively studied (40) in the tetanus toxin antigen model system. Cleavage site maps were generated for the corresponding proteins to the identified NOD stimulatory peptides, and in all cases the identified peptides were among the predicted naturally processed fragments (data not shown). Finally, while the biological relevance of these active sequences with regard to type 1 diabetes is as yet unknown, BDC2.5 T-cells, when stimulated by the peptide derived from the Sendai virus (p130884), have been able to adoptively transfer disease into NOD/scid mice (Table 2). However, we have not been able to transfer disease into NOD/scid mice using a peptide-specific NOD cell line stimulated in vitro with p1308-84. Our results are consistent with the recent report by Stratmann et al. (41), in which an NOD T-cell line, selected and expanded with an Ag7/BDC2.5 mimotope (AHHPIWARMDA) tetramer, was not able to generate consistent insulitis or diabetes when transferred to RAG0/0/NOD mice. That mimotope, and the microbial peptides reported here, contain the motif P4W6M9, which has been found to be highly effective in stimulating BDC2.5 cells. One possible explanation for the inability of NOD cells that are expanded in vitro to cause diabetes is the lack of avidity modulation by tissue APCs, the absence of CD8+ cells for optimal disease transfer (42), or the in vitro generation of regulatory T-cells able to counterregulate the pathogenic activity of the autoimmune antigen-specific T-cell population. Thus, the in vivo behavior of in vitroderived CD4+ T-cell lines cannot be predicted based solely on their TCR specificity. Indeed, to our knowledge, there are no examples of diabetes induced by T-cell lines derived from spontaneously arising autoreactive cells that have been stimulated in vitro with peptide antigens. In humans, the self-antigens GAD65 and proinsulin are known to be stimulatory for T-cells from individuals considered at risk for type 1 diabetes (43). CD4+ GAD65-reactive TCCs have been used to screen synthetic mimics of natural epitopes to identify the natural antigen sequences (44). GAD65 TCCs have also been used to screen peptide libraries to identify microbial epitopes derived from sources such as the human cytomegalovirus (hCMV) (45) and Neisseria meningitidis (36), which are cross-reactive with these autoreactive cells. Enterovirus infection (Coxsackievirus) has been implicated in the pathogenesis of type 1 diabetes due to sequence similarities between the virus and tyrosine phosphatase pIAR and heat shock protein 60 (HSP60), and humoral immune responses were documented in a small percentage of patients after infection with the virus (14). A role for molecular mimicry between GAD65-reactive TCCs and a homologous Coxsackievirus protein sequence was proposed a decade ago (13). However, cross-reactivity between GAD65-specific TCCs and Coxsackievirus sequences could not be detected in several studies conducted since that time (46). T-cell cross-reactivity between GAD65-specific T-cells and a peptide of the hCMV has been demonstrated (35), and clinical onset of type 1 diabetes accompanied by acute hCMV infection has been reported (47). As further evidence that molecular mimicry may be involved in the pathogenesis of type 1 diabetes, rotavirus infection in high-risk children caused a statistically significant association with a rise in islet autoantibodies for tyrosine phosphatase IA protein, insulin, and GAD65 (48). Infections can abrogate as well as enhance autoimmune diabetes (49,50). For example, spontaneous diabetes in NOD mice can be corrected by exposure to microbial and viral agents. Conversely, it has been well documented that infections can enhance autoimmune diabetes via molecular mimicry (11,13,48) or by bystander mechanisms (51). In this study, we have uncovered the footprint of common pathogens in the activation of diabetogenic T-cells. Perhaps these seemingly disparate observations can be reconciled by viewing the activation of this T-cell as an initiating event in the disease process, which ultimately requires further untoward events. In the initial phase, mimicry could supply the force for expansion, which may, due to immune diversion mechanisms, be protective. However, subsequent events, such as infection by pancreas-specific viruses, may later lead to target tissue damage, further immune expansion, and diversification of the islet response, leading to clinical disease. Therefore, our work uncovers new relationships between disease-causing T-cells and their environmental stimulants. Several of the peptides that were stimulatory for BDC2.5 TCCs were also able to stimulate T-cells from young, pre-diabetic NOD mice, demonstrating that the antigen specificities of this clone are present in many different cells of the NOD T-cell repertoire. These results confirm previous evidence that different TCRs can share some but not all specificities with another T-cell population (5). The results from this study also suggest that within the NOD T-cell repertoire there exists a group of cross-reactive T-cell subsets that recognize peptides from proteins of pathogen origin. Therefore, the accessibility of autoreactive T-cells to bind peptides of pathogen origin (degeneracy of antigen recognition) could directly affect the frequency of the autoreactive T-cell pool. In other words, it is possible that pathogen peptides shape the peripheral autoreactive T-cell pool. The identification of natural peptide sequences that are cross-reactive with an islet cellspecific TCC is fundamental to the understanding of the mechanisms initiating type 1 diabetes and may have clinical relevance in the development of early prediction assays and antigen-based intervention strategies.
This work was supported by Mixture Sciences, the Diabetes National Research Group (grant no. DNR0301Pini), and National Institutes of Health grants from the National Institute of Diabetes and Digestive and Kidney Diseases (NIDDK) and National Institute of Allergy and Infectious Diseases (NIAID) (to N.S.). We thank J. Ostresh, A. Nefzi, and the chemistry group at Torrey Pines Institute for Molecular Studies for the preparation of the peptide compounds used in this study.
V.A.J. and G.M.A. contributed equally to this work. Address correspondence and reprint requests to Clemencia Pinilla, PhD, Torrey Pines Institute for Molecular Studies, 3550 General Atomics Ct., San Diego, CA 92121. E-mail: cpinilla{at}tpims.org Received for publication October 20, 2003 and accepted in revised form March 19, 2004
Abbreviations: APC, antigen-presenting cell; hCMV; human cytomegalovirus; MHC, major histocompatibility complex; PS-SCL, positional scanning synthetic combinatorial library; SI, stimulation index; TCC, T-cell clone; TCR, T-cell receptor
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