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Published online April 21, 2008
Diabetes 57:1983-1986, 2008
DOI: 10.2337/db08-0270
© 2008 by the American Diabetes Association
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Brief Report

Association Analysis of Type 2 Diabetes Loci in Type 1 Diabetes

Hui-Qi Qu1, Struan F.A. Grant2,3, Jonathan P. Bradfield2, Cecilia Kim2, Edward Frackelton2, Hakon Hakonarson2,3, and Constantin Polychronakos1

1 Departments of Pediatrics and Human Genetics, McGill University, Montreal, Québec, Canada
2 Center for Applied Genomics, Philadelphia, Pennsylvania
3 Department of Pediatrics and Division of Human Genetics, The Children's Hospital of Philadelphia, Philadelphia, Pennsylvania

Corresponding authors: Hakon Hakonarson, hakonarson{at}chop.edu, and Constantin Polychronakos, constantin.polychronakos{at}mcgill.ca

OBJECTIVE—To search for a possible association of type 1 diabetes with 10 validated type 2 diabetes loci, i.e., PPARG, KCNJ11, WFS1, HNF1B, IDE/HHEX, SLC30A8, CDKAL1, CDKN2A/B, IGF2BP2, and FTO/RPGRIP1L.

RESEARCH DESIGN AND METHODS—Two European population samples were studied: 1) one case-control cohort of 514 type 1 diabetic subjects and 2,027 control subjects and 2) one family cohort of 483 complete type 1 diabetic case-parent trios (total 997 affected). A total of 13 tag single nucleotide polymorphisms (SNPs) from the 10 type 2 diabetes loci were analyzed for type 1 diabetes association.

RESULTS—No association of type 1 diabetes was found with any of the 10 type 2 diabetes loci, and no age-at-onset effect was detected. By combined analysis using the Wellcome Trust Case-Control Consortium type 1 diabetes data, SNP rs1412829 in the CDKN2A/B locus bordered on significance (P = 0.039) (odds ratio 0.929 [95% CI 0.867–0.995]), which did not reach the statistical significance threshold adjusted for 13 tests ({alpha} = 0.00385).

CONCLUSIONS—This study suggests that the type 2 diabetes loci do not play any obvious role in type 1 diabetes genetic susceptibility. The distinct molecular mechanisms of the two diseases highlighted the importance of differentiation diagnosis and different treatment principles.


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