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Genome-Wide Scan for Estimated Glomerular Filtration Rate in Multi-Ethnic Diabetic Populations

The Family Investigation of Nephropathy and Diabetes (FIND)

  1. Jeffrey R. Schelling,
  2. Hanna E. Abboud,
  3. Susanne B. Nicholas,
  4. Madeleine V. Pahl,
  5. John R. Sedor,
  6. Sharon G. Adler,
  7. Nedal H. Arar,
  8. Donald W. Bowden,
  9. Robert C. Elston,
  10. Barry I. Freedman,
  11. Katrina A.B. Goddard,
  12. Xiuqing Guo,
  13. Robert L. Hanson,
  14. Eli Ipp,
  15. Sudha K. Iyengar,
  16. Gyungah Jun,
  17. W.H. Linda Kao,
  18. Balakuntalam S. Kasinath,
  19. Paul L. Kimmel,
  20. Michael J. Klag,
  21. William C. Knowler,
  22. Robert G. Nelson,
  23. Rulan S. Parekh,
  24. Shannon R. Quade,
  25. Stephen S. Rich,
  26. Mohammed F. Saad,
  27. Marina Scavini,
  28. Michael W. Smith,
  29. Kent Taylor,
  30. Cheryl A. Winkler,
  31. Philip G. Zager,
  32. Vallabh O. Shah and
  33. on behalf of the Family Investigation of Nephropathy and Diabetes Research Group*
  1. Address correspondence and reprint requests to Dr. Sudha Iyengar, Department of Epidemiology and Biostatistics, Case Western Reserve University, Wolstein Research Building, Rm. 1300, 10900 Euclid Ave., Cleveland, OH 44106-7281. E-mail: ski{at}case.edu

Abstract

OBJECTIVE— Diabetic nephropathy, the most common cause of end-stage renal disease, aggregates in families and specific ethnic groups. Deconstructing diabetic nephropathy into intermediate, quantitative phenotypes may increase feasibility of detecting susceptibility loci by genetic screens. Glomerular filtration rate (GFR), which characterizes diabetic nephropathy, was employed as a quantitative trait in a preliminary whole-genome scan.

RESEARCH DESIGN AND METHODS— Estimated GFR (eGFR) was calculated for 882 diabetic sibpairs (mean age 57 years) of African-American (25.6% of total), American Indian (8.6%), European-American (14.2%), and Mexican-American (51.6%) descent enrolled in the initial phase of the Family Investigation of Nephropathy and Diabetes (FIND). A whole-genome scan was performed using 404 microsatellite markers (average spacing 9 cM) and model-free linkage analysis.

RESULTS— For all ethnicities combined, strong evidence for linkage was observed on chromosomes 1q43 (P = 3.6 × 10−3), 7q36.1 (P = 2.1 × 10−4), 8q13.3 (P = 4.6 × 10−4), and 18q23.3 (P = 2.7 × 10−3). Mexican-American families, who comprised the major ethnic subpopulation in FIND, contributed to linkage on chromosomes 1q43, 2p13.3, 7q36.1, 8q13.3, and 18q23.3, whereas African-American and American-Indian families displayed linkage peaks on chromosomes 11p15.1 and 15q22.3, respectively.

CONCLUSIONS— We have demonstrated multiple chromosomal regions linked to eGFR in a multi-ethnic collection of families ascertained by a proband with diabetic nephropathy. Identification of genetic variants within these loci that are responsible for the linkage signals could lead to predictive tests or novel therapies for subsets of patients at risk for diabetic nephropathy.

Footnotes

  • Published ahead of print at http://diabetes.diabetesjournals.org on. DOI: 10.2337/db07-0313.

  • Additional information for this article can be found in an online appendix at http://dx.doi.org/10.2337/db07-0313.

  • *

    * A complete list of members of the Family Investigation of Nephropathy and Diabetes Research Group and their respective affiliations can be found in the appendix.

  • The content of this publication does not necessarily reflect the views or policies of the Department of Health and Human Services, nor does mention of trade names, commercial products, or organizations imply endorsement by the U.S. government.

  • The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked “advertisement” in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.

    • Accepted October 8, 2007.
    • Received March 14, 2007.
| Table of Contents

This Article

  1. Diabetes January 2008 vol. 57 no. 1 235-243
  1. » Abstract
  2. Online-Only Appendix
  3. All Versions of this Article:
    1. db07-0313v1
    2. 57/1/235 most recent

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