miR-200a Prevents Renal Fibrogenesis Through Repression of TGF-β2 Expression
OBJECTIVE Progressive fibrosis in the diabetic kidney is driven and sustained by a diverse range of profibrotic factors. This study examines the critical role of microRNAs (miRNAs) in the regulation of the key fibrotic mediators, TGF-β1 and TGF-β2.
RESEARCH DESIGN AND METHODS Rat proximal-tubular epithelial cells (NRK52E) were treated with TGF-β1 and TGF-β2 for 3 days, and expression of markers of epithelial-to-mesenchymal transition (EMT) and fibrogenesis were assessed by RT-PCR and Western blotting. The expression of miR-141 and miR-200a was also assessed, as was their role as translational repressors of TGF-β signaling. Finally, these pathways were explored in two different mouse models, representing early and advanced diabetic nephropathy.
RESULTS Both TGF-β1 and TGF-β2 induced EMT and fibrogenesis in NRK52E cells. TGF-β1 and TGF-β2 also downregulated expression of miR-200a. The importance of these changes was demonstrated by the finding that ectopic expression miR-200a downregulated smad-3 activity and the expression of matrix proteins and prevented TGF-β–dependent EMT. miR-200a also downregulated the expression of TGF-β2, via direct interaction with the 3′ untranslated region of TGF-β2. The renal expression of miR-141 and miR-200a was also reduced in mouse models representing early and advanced kidney disease.
CONCLUSIONS miR-200a and miR-141 significantly impact on the development and progression of TGF-β–dependent EMT and fibrosis in vitro and in vivo. These miRNAs appear to be intricately involved in fibrogenesis, both as downstream mediators of TGF-β signaling and as components of feedback regulation, and as such represent important new targets for the prevention of progressive kidney disease in the context of diabetes.
Diabetic nephropathy is characterized by the progressive accumulation of extracellular matrix (ECM) in basement membranes, the glomerular mesangium, and peritubular interstitium, which leads to scarring and ultimately nephron dropout. Recent data have suggested an important role for specific microRNAs in enhancing fibrogenic signaling and sustaining profibrotic phenotypes (1) that potentially contribute to the development and progression of a number of diseases (2). MicroRNAs (miRNAs) are short, single-stranded RNA molecules that interact with the 3′ untranslated region (UTR) of mRNAs to regulate gene expression. This usually occurs by repression of protein translation via a mechanism that involves incomplete base pairing with the 3′UTR of target mRNAs, or by causing target sequences to become unstable and degraded sooner (2,3), thereby causing protein expression to be downregulated.
In the kidney, renal fibrosis is initiated and sustained by a number of different prosclerotic factors. Among the most important of the prosclerotic factors appears to be TGF-β (4,5), which stimulates the expression of matrix proteins and triggers tubular epithelial-to-mesenchymal transition (tubular EMT) in tubular cells. In the kidney, TGF-β is expressed in three different isoforms. Each isoform induces fibrogenesis in renal cells in vitro (6), possibly acting through the same receptors. However, differential effects on immune function and development have been reported (7,8). For example, deletion of TGF-β1 results in widespread distribution and immunomodulatory effects not seen with TGF-β2. In the streptozotocin model of diabetes, the expression of TGF-β2 is markedly increased in the kidney, paralleling renal ECM accumulation early in disease (8,9). By contrast, TGF-β1 protein levels remain unchanged during this period despite increased mRNA levels (9). Consequently, recent studies have focused on the antifibrotic potential of selectively targeting TGF-β2 for the prevention of progressive renal disease (10,11).
A number of different factors are thought to alter the expression of TGF-β2 in the kidney, including miRNAs. In particular, 3′UTR of TGF-β2 contains a target site for miR-141/200a. Moreover, TGF-β1 has been shown to regulate the miR-200 family in a renal cell line (12). In this study, we investigate the role of miR-200a and its closely related family member, miR-141, as regulators of TGF-β2 and fibrogenesis both in vitro and in vivo, using two animal models of renal fibrosis, representing earlier- and later-stage kidney disease.
RESEARCH DESIGN AND METHODS
In vitro studies—cell culture.
The rat kidney tubular epithelial cell line (NRK52E) was obtained from the American Tissue Culture Collection (Rockville, MD) and maintained in Dulbecco's modified Eagle medium containing 10% serum and 25 mmol/l glucose as previously described. For experimental treatments, serum was reduced to 2%.
Drugs and antibodies.
Recombinant human TGF-β1, TGF-β2, normal goat IgG, and TGF-β2 neutralizing antibody were from R&D systems (Minneapolis, MN) and used at specified concentrations. Typically, 24 h after cells were seeded, the medium was replaced with fresh medium containing 2% serum with or without the treatment, and cells were incubated a further 3 days. For Western blotting, primary antibodies were collagen I and α-smooth muscle actin (αSMA) (1:2,000; Dako), E-cadherin (1:2000; Becton Dickinson), and β-actin (1:10,000; Abcam) and secondary antibodies were goat anti-mouse or goat anti-rabbit HRP conjugated (1:2,000; Dako).
RNA extraction and real-time PCR.
Gene expression was analyzed by real-time (RT)-PCR, using the TaqMan system based on real-time detection of accumulated fluorescence (ABI Prism 7500; Perkin-Elmer, Foster City, CA). Fluorescence for each cycle was quantitatively analyzed by an ABI Prism 7500 Sequence Detection System (Perkin-Elmer). To control for variation in the amount of DNA that was available for PCR in the different samples, gene expression of the target sequence was normalized in relation to the expression of an endogenous control, 18S rRNA (18S rRNA TaqMan Control Reagent kit, ABI Prism 7500; Perkin-Elmer). Details of primers and TaqMan probes for these genes have been previously reported (4). Each experiment was conducted in four or six replicates. Results were expressed relative to control (untreated) cells, which were arbitrarily assigned a value of 1.
For miRNA analysis, cDNA synthesis and RT-PCR assays were performed using TaqMan miRNA assays as per manufacturer's recommendations (Applied Biosystems, Foster City, CA). Experimental groups were in replicates of six and normalized to Sno135 or U87 for mouse and rat samples, respectively.
Transfection of miRNA precursors.
NRK52E cells were seeded at 3 × 104 cells per well in 12-well plates. The following day, medium was replaced with OptiMEM (Invitrogen), and cells were transfected with premiRNAs (Applied Biosystems) at 100 nmol/l final concentration using Oligofectamine (Invitrogen). In each case premiRNA negative controls were used at the same concentration. Cells were harvested three days posttransfection. Under these conditions, transfection efficiency was high, typically with 5–10,000-fold higher miRNA expression observed in transfected cells when compared with endogenous levels.
TGF-β2 3′UTR-luciferase reporter analyses.
For transfection, NRK52E cells were seeded 1 × 105 cells per well in 6-well plates the day before transfection (4). The TGB-β2 3′UTR was cloned into the pRL reporter vector (Promega) by PCR and represents the entire 352 nucleotides of the 3′UTR. The mutant TGF-β2 3′UTR, synthesized (GenScript), was identical to the wild-type sequence except for the seed region, where the complementary sequence was used.
pRL-reporter plasmids (0.5 μg/ml), CMV-galactosidase construct, and miRNAs were cotransfected using Lipofectamine 2000 (Invitrogen) in OptiMEM medium. Cells were harvested 48 h posttransfection using the Dual-Luciferase reporter assay system (Promega), and luciferase and galactosidase assays were performed as per manufacturer's recommendations. All experiments were performed in triplicate, and each experiment was repeated at least twice.
The CAGA12-luciferase reporter was used to assess SMAD3 activity. The construct contains the luciferase gene, the expression of which is driven by a promoter with CAGA boxes (CAGA12) to which activated SMAD3 binds (13). Transfection experiments and luciferase assays were performed as for the 3′UTR assays.
The TGF-β2 ELISA (R&D Systems) was used to determine the total level of TGF-β2 in acid-activated cell culture supernatants as per the manufacturer's recommendations.
Western blot analysis.
Whole-cell lysates that contained 10–50 μg of protein were subjected to 10–12% SDS-PAGE and transferred onto polyvinylidene fluoride membranes by semidry transfer. Membranes were blocked in 5% skim milk/Tris-buffered saline with Tween for 1 h at room temperature. All primary and secondary antibody incubations were for 1 h at room temperature. Detection was by chemiluminescence and images captured on the XRS Chemidoc system (BioRad) and analyzed by Quantity One software (BioRad).
In vivo studies.
To explore the relationship between miR-200a and the development and progression of fibrotic kidney disease, renal fibrogenesis was studied in two animal models of renal fibrosis, representing earlier and later renal stage kidney disease, respectively. Early renal changes were examined in apoE knockout mice rendered diabetic by five daily intraperitoneal injections of streptozotocin (55 mg/kg) as previously described (14) and compared with apoE KO mice that received vehicle (citrate buffer) alone (n = 8/group). We have previously described that 10 weeks of diabetes is associated with all of the early changes of diabetic nephropathy including microalbuminuria, renal hypertrophy, hyperfiltration, and basement membrane (14). In the second model, c57bl6 mice were randomized to receive oral gavage with adenine (1 mg/kg/day) or vehicle (0.5% methylcellulose) for four weeks (n = 4/group). This results in marked tubulointerstitial fibrosis and nephron dropout, consistent histologically with changes seen in more advanced chronic kidney disease (15).
Four-micrometer paraffin kidney cortex sections were used for immunohistochemical analyses as previously described (16). Primary antibodies used were collagen IV, fibronectin, and αSMA (1:800; Southern Biotechnology, Birmingham, AL). Secondary antibodies were used as previously described (16). Finally, sections were counterstained with Mayer's hematoxylin, dehydrated, and mounted.
Values are shown as means ± SEM unless otherwise specified. Statview (Brainpower, Calabasas, CA) was used to analyze data by unpaired Student t test or by ANOVA and compared using Fisher least significant differences post hoc test. Nonparametric data were analyzed by Mann-Whitney U test. P values < 0.05 were considered significant.
TGF-β2 induces expression of EMT and fibrogenesis.
Exposure of NRK52E cells to TGF-β2 (10 ng/ml) for 3 days resulted in a morphological and phenotypic transition characteristic of EMT (Fig. 1A) associated with reduced expression of the epithelial marker, E-cadherin; increased expression of mesenchymal markers, vimentin and αSMA; and increased expression of ECM proteins, fibronectin, collagen I, and collagen IV (Fig. 1B). TGF-β2 also induced the expression of TGF-β1 and the expression of PAI-1, a classical marker of TGF-β1 signaling (Fig. 1B). These changes in expression were also observed at the protein level (Fig. 1C and D).
TGF-β1 induces TGF-β2 and fibrogenesis.
Treatment of the NRK52E cells with TGF-β1 (10 ng/ml, 3 days) also resulted in EMT and associated changes in gene expression (Fig. 2A). TGF-β1 was also able to induce its own expression (Fig. 2B) and that of TGF-β2 at a gene (Fig. 2B) and protein level (Fig. 2C). To explore the functional role of TGF-β2 changes induced by TGF-β1, a neutralizing antibody specific for TGF-β2 was added to NRK52E cells followed by TGF-β1 treatment. This attenuated the induction of EMT and subsequent fibrogenesis associated with TGF-β1 treatment (Fig. 2D). EMT was also blocked by the TGF-β type 1 receptor antagonist SB431542 (Fig. 2E), as was the induction of TGF-β2.
TGF-β1 and TGF-β2 downregulate the expression of miR-200a.
Treatment with TGF-β1 led to decreased expression of miR-200a (Fig. 3A) and miR-200b/c as previously reported (17). This downregulation of miR-200a by TGF-β1 was prevented by the TGF-β type 1 receptor antagonist SB431542 (Fig. 3B). NRK52E cells exposed to TGF-β2 (10 ng/ml) for 3 days also reduced the expression of miR-200a, miR-200b, and miR-200c (Fig. 3C), of which the decrease in miR-200a was the most pronounced. Neither TGF-β isoform resulted in a significant change in miR-141 expression, when compared with untreated cells.
miR-200a downregulates the expression of ECM proteins.
Ectopic expression of miR-200a after transfection with premiR-200a resulted in decreased expression of several ECM genes, including collagen I and IV and fibronectin, compared with premiRNA-control transfected NRK52E cells (Fig. 4A). Some of these changes in ECM protein expression were also observed at the protein level (Fig. 4B). miR-200a also caused reduced expression of the mesenchymal marker, αSMA, and increased expression of the epithelial marker, E-cadherin mRNA levels (Fig. 4A), consistent with previous reports that the miR-200 family targets the transcriptional repressors of E-cadherin, ZEB1, and ZEB2 (12,18–21). Finally the expression of PAI-1, a downstream target of TGF-β signaling, was also decreased (Fig. 4A).
Because the expression of many fibrotic genes is Smad3 dependent (22), we also investigated whether SMAD3 activity can be modulated by miR-200a. Interestingly, transfection with miR-200a was able to attenuate SMAD3 activity by 50% in the absence of exogenous TGF-β1 and totally abolished the activation of SMAD3 in the presence of TGF-β1 (Fig. 4C). This is also observed at the level of SMAD3 phosphorylation, which is reduced relative to total SMAD3 (Fig. 4D).
miR-141 downregulates the expression of ECM proteins.
miR-141 shares the same seed sequence as miR-200a (Fig. 5A). To study the fibrogenic actions of miR-141, NRK52E cells were transfected with miR-141 and changes in gene expression were compared with premiRNA-control transfected NRK52E cells. As with miRNA-200a, miR-141 also reduced the expression of collagen I, fibronectin, αSMA, and TGF-β2 and increased the expression of E-cadherin (Fig. 5B).
Both miR-141 and miR-200a repress the expression of TGF-β2.
The expression of TGFβ2 was also significantly decreased in miR-200a transfected cells (Fig. 4A). As miR-200a and TGF-β2 3′UTR share the same seed sequence as shown (Fig. 5A), we further investigated whether TGF-β2 is the direct target of miR-200a for translational repression. In these experiments we used luciferase reporter constructs incorporating a wild-type or mutant 3′UTR of TGF-β2 in which the sequence corresponding to the seed region was altered (Fig. 5A). Proximal tubular cells were cotransfected with the luciferase reporter constructs, a β-galactosidase construct, and either premiR-141, premiR-200a, or the premiR-control. This experiment demonstrated that both miR-141 and miR-200a directly repressed luciferase activity with the wild-type 3′UTR of TGF-β2 (Fig. 6A) but not with the mutant 3′UTR (Fig. 6B).
In separate experiments, cells were treated with TGF-β1 4 h after transfection. TGF-β1 significantly increased luciferase activity in cells transfected with the wild-type 3′UTR of TGF-β2 and miR-control (Fig. 6C and D). These data are consistent with our earlier observations demonstrating increased expression of TGF-β2 in response to TGF-β1 (Fig. 2B). When TGF-β1-treated cells were also transfected with either miR-141 (Fig. 6C) or miR-200a (Fig. 6D), the TGF-β1-induced increase in luciferase activity in cells with the wild-type 3′UTR of TGF-β2 was abolished. Consistent with these observations, transfection of cells with miR-200a reduced the expression of TGF-β2 gene and total TGF-β2 protein levels as demonstrated by ELISA and RT-PCR, respectively (Fig. 6E and F).
Decreased miR-141 and miR-200a in the kidneys from diabetic mice.
To further explore the relationship between miRNAs and diabetic kidney disease, we examined the expression of miR-141 and miR-200a in the cortex of kidneys from diabetic apoE KO mice. In this model, the combination of chronic hyperglycemia and dyslipidemia results in augmented renal fibrosis (14), similar to that seen in early diabetic renal disease in humans. As previously described, diabetes was associated with increased protein expression of αSMA, fibronectin, and Col IV when compared with nondiabetic controls (Fig. 7A). Real-time quantitative PCR (QPCR) confirmed changes in αSMA, Col IV, and fibronectin mRNA levels (Fig. 7B). In addition, a 1.6-fold increase in TGF-β1 and a 2.8-fold increase in TGF-β2 mRNA (Fig. 7C) were also observed in the cortex of kidneys from diabetic mice. Consistent with these changes, the gene expression levels of both miR-141 and miR-200a were also significantly reduced (Fig. 7D). Notably, the relative abundance of miR-200a was about 8–22-fold higher than that of miR-141 in tubular cells and kidney cortex (Fig. 7E).
Decreased miR-141 and miR-200a in advanced kidney disease.
In further experiments we investigated the expression of ECM genes and miR-141/200a in the advanced renal disease associated with adenine-induced renal fibrosis. As previously described, exposure to adenine resulted in marked tubulointerstitial fibrosis (Fig. 8A, right panel) associated with a massive upregulation in the expression of ECM genes as well as the fibrogenic mediators TGF-β1 and TGF-β2 (Fig. 8B). Consistent with our earlier in vitro and in vivo observations, miR-200a was significantly decreased (Fig. 8C). miR-141 was also significantly reduced in this model.
MicroRNAs are now recognized to be key regulators of a number of important developmental, homeostatic, and pathogenic pathways. In this study, we demonstrate that miR-200a and miR-141 impact on the development and progression of TGF-β-dependent EMT and fibrosis in vitro. In particular, miR-200a and miR-141 are shown to be direct translational repressors of TGF-β2 by targeting the 3′UTR of this gene, as shown by experiments using a wild-type TGF-β2 3′UTR-luciferase construct. Furthermore, it was also demonstrated that miR-200a could prevent the TGF-β1-induced expression of TGF-β2 and other profibrotic changes, suggesting that it is an important downstream regulator of TGF-β1 signaling. Consistent with these findings in vitro, in early and more advanced models of kidney disease, the downregulation of both miR-200a and miR-141 were also associated with increased TGF-β expression and renal scarring.
Although a number of different factors contribute to renal scarring in the diabetic kidney, the best known and most studied prosclerotic mediator is TGF-β (6), which is increased in the diabetic kidney (9). Although all isoforms may have profibrotic actions in vitro, recent data points to the selective and predominant elevation of TGF-β2 as being particularly important in the diabetic kidney (8,11). In both our early and advanced models of renal fibrosis, the expression of TGF-β2 was markedly increased. Recent studies have demonstrated that specific targeting of TGF-β2 attenuates the development of renal fibrosis in diabetic models (6,10). Consistent with this hypothesis, we were able to reduce fibrogenesis in vitro, with a neutralizing antibody to TGF-β2 or alternatively by repressing TGF-β2 translation with miR-200a and miR-141.
EMT of mature tubular epithelial cells in the kidney (also known as type 2 EMT) (23) is now recognized as a contributor to the renal accumulation of matrix protein associated with diabetic nephropathy and is fundamentally linked to the progression of renal interstitial fibrosis. Recent evidence has demonstrated that a proportion of interstitial fibroblasts, the principal effector cells in this process, are derived from tubular epithelial cells in the diseased kidney via EMT (24). Furthermore, blockade of specific steps of EMT dramatically reduces fibrotic lesions in a number of models of kidney fibrosis, including diabetes, highlighting the important role of EMT in nephropathy. Although multiple signaling pathways and factors may play a role in different aspects of EMT, its most potent inducer is TGF-β1, which is able to initiate and complete the entire EMT process via SMAD recruitment as well as via non-SMAD pathways (4,25). In this study, we show that these actions require the induction of TGF-β2 after the downregulation of its translational repressors, miR-200a and miR-141. Although these studies have been performed in immortalized cells, in which expression of miRs and their targets may be different from primary cells lines, these findings are consistent with previous studies that have identified the miR-200 family of microRNAs as regulators of the epithelial cell phenotype and inhibitors of EMT in tumor models (12,19,20,26) and that point to miR-200a, in particular, as an important new target for the prevention of renal fibrogenesis. Given that reduced miR-200a levels are associated with increased ECM expression, and that restoring expression of miR-200a prevents many of the fibrotic changes in proximal tubular cells, miR-200a appears to play an important role in ECM accumulation and fibrosis. Indeed, the ability of miR-200a to attenuate SMAD3 activation has potential implications and could prove an attractive option for targeting fibrotic pathways at different levels.
Although we have shown that miR-200a and miR-141 specifically target the 3′UTR of TGF-β2, it is well known that some miRs are promiscuous and may bind the UTR regions of a number of different targets. Interaction with these other targets also has the potential to modify the responses to miRs observed in this study. For example, another important target of the miR-200 family are ZEB1 and ZEB2, themselves transcriptional repressors of E-cadherin in epithelial cells. By repressing the translation of ZEB1/2 in tumor models, the miR-200 family has been shown to protect epithelial cells against the action of pro-EMT factors such as TGF-β1 and promote mesenchymal-to-epithelial transition (1,12). We have previously shown that another microRNA family, miR-192/215, which also acts as a translational repressor of ZEB2, does not modulate the expression of matrix proteins in response to TGF-β1 (17). Furthermore, mir-141 and miR-200a may not only work as translational repressors of target mRNAs, because they also caused a decrease in TGF-β2 mRNA levels. These findings confirm recent data demonstrating that some miRNAs can alter the mRNA levels of target genes (3). This ability is probably independent of the ability of these microRNAs to regulate the translation of target mRNAs.
At first glance, miRNA-200a would appear to be an attractive option for targeting renal fibrosis. Yet, while miR-200a exhibited significant antifibrotic effects in transfected cells, the therapeutic means of achieving this in vivo remain to be established, and the potential for off-target effects is considerable. Modulation of miRNAs using antisense inhibitors to block or mimics to enhance their activity may be one option, while other researchers are working on selective small-molecule inhibitors/activators of miRNA ligation. It is likely that better understanding of the role and activities of these antifibrotic miRNAs will provide novel means to inhibit renal fibrogenesis including in the context of diabetes.
This study was supported by a Centre Grant from the Juvenile Diabetes Research Foundation and the National Health and Medical Research Council of Australia (NHMRC367620, NHMRC526663), as well as Kidney Health Australia (Bootle bequest). No potential conflicts of interest relevant to this article were reported.
B.W., P.Ko., A.M., A.W., K.J.-D., and W.C.B. researched data. C.W., M.C.T., and M.E.C. reviewed/edited the manuscript. M.T.C. researched data and reviewed/edited the manuscript. P.Ka. researched data and wrote the manuscript.
The costs of publication of this article were defrayed in part by the payment of page charges. This article must therefore be hereby marked “advertisement” in accordance with 18 U.S.C. Section 1734 solely to indicate this fact.
- Received June 28, 2010.
- Accepted October 1, 2010.
- © 2011 by the American Diabetes Association.
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