Variants in FTO gene are not associated with obesity in a Chinese Han population

Abstract

Objective. Recently, genome-wide association studies have provided evidence that several common variants within fat mass and obesity associated gene (FTO) gene were significantly associated with obesity in populations of European origin. However, their effects in other ethnic populations remain to be elucidated.

Research Design and Methods. In this study, we examined the association between three FTO variants (rs8050136, rs9939609 and rs9930506) and obesity and related traits in a population-based study of 3,210 unrelated Chinese Hans from Shanghai and Beijing. In secondary analyses, we also tested for association with type 2 diabetes and related traits. Logistics regression and generalized linear models were used to test for additive and dominant effects of the risk alleles.

Results. The minor allele frequencies (MAF) in our population (0.12, 0.11, and 0.20, respectively) were substantially lower than those observed for populations of European descent (e.g. for CEU population of HapMap: 0.45, 0.48, and 0.45, respectively). Despite our study being sufficiently powered to detect effects similar to those previously reported, none of the FTO SNPs were found to be associated with obesity, overweight, BMI, waist circumference and body fat percentage. In addition, none of the SNPs exhibited significant associations with fasting levels of plasma glucose, HbA1c, insulin and β-cell function (estimated as HOMA-B) under either additive or dominant model in the quantitative trait analyses. Analyses stratified by sex or geographical region did not change these observations.

Conclusion. Therefore, our data do not support that the FTO common variants are major contributors of obesity or type 2 diabetes in the Chinese Han population.