Expression levels estimated with Affymetrix MAS4.0 are in file AvgDif.txt; 

Expression levels estimated with dChip are in file dChip.txt; 

Differentially expressed genes are listed in file DifferLists.xls.  There are four sheets in this file, each for one of the four tissues. 

The first raw of each file lists samples studied.  The sample labels are: 
B6F1		B6-ob/ob, adipose tissue, replicate 1
B6F2		B6-ob/ob, adipose tissue, replicate 2
BTBRF1	BTBR-ob/ob, adipose tissue, replicate 1
BTBRF2	BTBR-ob/ob, adipose tissue, replicate 2
B6L1		B6-ob/ob, liver, replicate 1
B6L2		B6-ob/ob, liver, replicate 2
BTBRL1	BTBR-ob/ob, liver, replicate 1
BTBRL2	BTBR-ob/ob, liver, replicate 2
B6M1		B6-ob/ob, skeletal muscle, replicate 1
B6M2		B6-ob/ob, skeletal muscle, replicate 2
BTBRM1	BTBR-ob/ob, skeletal muscle, replicate 1
BTBRM2	BTBR-ob/ob, skeletal muscle, replicate 2
B6P1		B6-ob/ob, pancreatic islets, replicate 1
B6P2		B6-ob/ob, pancreatic islets, replicate 2
BTBRP1	BTBR-ob/ob, pancreatic islets, replicate 1
BTBRP2	BTBR-ob/ob, pancreatic islets, replicate 2

For questions, please contact Hong Lan at 608-262-4705 or hlan@facstaff.wisc.edu.