TABLE 2

DUSP12 region haplotypes in Caucasians

HaplotypeCase frequencyControl frequencyχ2P
2TCCGCC2CGAGAGTTG2CGG0.2770.3100.9570.328
1CTGATT1GTCCGAGCA1TTC0.2710.1847.9640.005
2TCCGCT2CGACAGGTG2CGG0.1240.1682.9070.088
2CTGATT1GTCCGAGCA2CTC0.0840.0940.2030.652
2TCCGCC2CGACAGTTG2CGG0.0760.0690.1450.703
2TCCGCT2CTACGGGCA2CTC0.0430.0631.5150.218
2CTCATT1GTACGGGCG2CTC0.0400.0420.0230.879
2TCCGCC2CGACAGTTG1CGG0.0140.0251.1360.287
  • Table 2 shows the haplotypes from the STR at −8379 through SNP +10309, with only the common (minor allele frequency >0.1) variants included. The two STR variants (in bold) are encoded as 194 bp = 1, and all other alleles = 2 (−8379 and + 6705). For the InDel variant at −1726, deletion is encoded as 1 and insertion as 2. The table includes 21 variants: −8379, −8340, −6735, −6229, −5606, −4559, −3795, −1726, −852, −643, −377, +838, +1759, +2115, +2612, +2680, +4935, +6180, +6705, +7580, +10157, and +10309.