Summary of SNPs typed in Caucasian individual samples for DUSP12 region
Location | Name | Alleles | Case frequency | Control frequency | P allelic | P additive | P recessive | P dominant |
---|---|---|---|---|---|---|---|---|
−34702 | rs905595 | G/C | 0.255 | 0.250 | 0.704 | 0.900 | 0.830 | 1.00 |
−32767 | rs2050887 | A/G | 0.042 | 0.034 | 0.356 | 0.700 | 1.00 | 0.700 |
−27665 | rs905591 | C/G | 0.121 | 0.139 | 0.526 | 0.690 | 0.450 | 0.630 |
−23504 | rs1417582 | G/A | 0.288 | 0.312 | 0.431 | 0.092 | 0.37 | 0.121 |
−22594 | rs1875763 | C/G | 0.516 | 0.481 | 0.269 | 0.500 | 0.290 | 0.730 |
−16394 | rs905589 | C/T | 0.356 | 0.389 | 0.301 | 0.640 | 0.460 | 0.460 |
−16193 | rs905590 | T/C | 0.042 | 0.064 | 0.155 | 0.340 | 0.500 | 0.240 |
−10473 | rs1503814 | A/G | 0.234 | 0.314 | 0.015 | 0.039 | 0.180 | 0.022 |
−10381 | rs12021510 | T/C | 0.053 | 0.070 | 0.365 | 0.664 | 1.00 | 0.430 |
−10275 | rs17415059 | G/A | 0.379 | 0.414 | 0.333 | 0.398 | 1.00 | 0.460 |
−10082 | Novel | 1 bp Del/Ins | 0.166 | 0.219 | 0.067 | 0.154 | 0.33 | 0.085 |
−8798 | rs6657266 | G/A | 0.052 | 0.057 | 0.978 | ND | ND | 0.870 |
−8797 | rs17415066 | C/T | 0.073 | 0.067 | 0.790 | ND | 0.24 | 0.550 |
−8379 | rs6143445 | STR (x/194) | 0.297 | 0.196 | 0.0008 | 0.0003 | 1.00 | 0.00011 |
−8340 | rs1340981 | T/C | 0.437 | 0.356 | 0.0134 | 0.056 | 0.041 | 0.106 |
−6735 | rs1027702 | C/T | 0.428 | 0.351 | 0.0172 | 0.092 | 0.14 | 0.052 |
−6229 | rs10917821 | C/G | 0.377 | 0.306 | 0.0143 | 0.092 | 0.119 | 0.077 |
−5606 | rs4657096 | G/A | 0.446 | 0.356 | 0.0072 | 0.036 | 0.036 | 0.052 |
−4559 | rs2174208 | C/T | 0.429 | 0.358 | 0.0293 | 0.078 | 0.038 | 0.196 |
−3795 | rs6687091 | C/T | 0.388 | 0.413 | 0.490 | 0.681 | 0.440 | 1.00 |
−2299 | rs10917835 | T/A | 0.053 | 0.054 | 0.844 | ND | ND | 1.00 |
−1726 | Novel | CT Ins/Del | 0.407 | 0.337 | 0.027 | 0.037 | 0.743 | 0.013 |
−852 | rs6427625 | C/G | 0.432 | 0.36 | 0.016 | 0.113 | 0.140 | 0.083 |
−643 | rs6427626 | G/T | 0.479 | 0.415 | 0.052 | 0.213 | 0.248 | 0.147 |
−377 | rs12121310 | A/C | 0.379 | 0.308 | 0.026 | 0.096 | 0.166 | 0.06 |
−213 | rs953301 | G/A | 0.044 | 0.048 | 0.795 | ND | ND | 0.715 |
838 | Novel | C/G | 0.291 | 0.321 | 0.377 | 0.427 | 1.00 | 0.25 |
1759 | rs7540096 | A/G | 0.495 | 0.418 | 0.035 | 0.105 | 0.159 | 0.068 |
2115 | rs1063178 | G/A | 0.382 | 0.291 | 0.008 | 0.023 | 0.123 | 0.012 |
2612 | rs1063179 | G/A | 0.051 | 0.059 | 0.788 | ND | ND | 0.623 |
2680 | rs10917852 | G/T | 0.377 | 0.411 | 0.344 | 0.445 | 1.00 | 0.278 |
4935 | rs12564653 | T/C | 0.484 | 0.410 | 0.042 | 0.118 | 0.194 | 0.071 |
6140 | rs12026369 | C/G | 0.032 | 0.060 | 0.062 | ND | ND | 0.071 |
6180 | rs4656332 | G/A | 0.43 | 0.359 | 0.048 | 0.133 | 0.192 | 0.084 |
6705 | rs10527814 | STR (x/194) | 0.326 | 0.218 | 0.001 | 0.0002 | 0.00007 | 0.85 |
7359 | rs16863049 | C/G | 0.045 | 0.044 | 0.946 | 0.595 | ND | 1.00 |
7580 | rs3820449 | C/T | 0.294 | 0.194 | 0.0015 | 0.00018 | 1.00 | 0.0001 |
10157 | rs1417580 | G/T | 0.482 | 0.407 | 0.043 | 0.102 | 0.192 | 0.056 |
10309 | rs1417581 | G/C | 0.476 | 0.413 | 0.082 | 0.175 | 0.299 | 0.094 |
16444 | rs2298019 | G/A | 0.130 | 0.148 | 0.4794 | 0.769 | 0.682 | 0.558 |
SNPs that were in complete linkage disequilibrium (r2 = 1) were typed only in 48 control samples and are not included. Likewise, SNPs with low minor allele frequencies (<5%) were generally not tested. Raw counts are available in supplemental Table 2, which is detailed in the online appendix. P values are shown for allelic tests, additive genotypic model (P additive), rare allele recessive model (P recessive), and rare allele dominant model (P dominant). ND, not determined where rare allele was uncommon and hence homozygotes were not observed.