TABLE 3

Primer and probe sequences used in this study.

Primer/probe nameSequenceLabel
HNF1AFS5′ GTC CTA CGT TCA CCA ACA CAG 3′none
HNF1ARS5′ GTG ATG AGC ATA GTC TGC GG 3′none
Anchor F5′ TGT GCC GGT CAT CAA CAG CAT GGG CAG 3′3′ FITC
Sensor C5′ AGC CTG ACC ACA̅ CTG CAG C 3′5′ LC red-640 3′ phosphate
Sensor T5′ AGC CTG ACC ACA̅ TTG CAG C 3′5′ LC red-705 3′ phosphate
  • The inserted mismatches in the probes Sensor C and Sensor T are underlined, and the site of the cSNP is marked in bold type.