TABLE 2

tSNP selection based on haplotype prediction (RH2) and single SNP prediction (RL2)

Haplotypers3787334rs6020572rs932420rs10485614rs2426157rs6067484rs2426159rs3787345rs2038526rs6060608
11111111111
22221222222
32222112111
42221112221
52221112211
62221112211
71111111111
82221222222
92221222222
101111111111
112222112112
122221122222
132121222222
142221222222
152221112221
162221112221
RL20.9650.9280.9650.8820.9700.9650.9550.9610.927
111111210.4710.4710.999
222212110.2560.7270.899
212111120.0870.8140.884
222222110.0420.8560.967
212111110.0190.8750.990
212112110.0190.8940.953
111111110.0190.9130.956
122212110.0120.925
222212120.0120.936
211111210.0100.946
212111120.0100.956
222212110.0100.966
222212110.0090.975
222222110.0090.984
122222110.0080.992
222222120.0081.0000
0.9610.9650.961
  • tSNPs printed in boldface. RH2, measure of association between the true and predicted haplotype dosage based on knowledge of tSNPs (20). RL2, the proportion of variance of each nontagging SNP explained by regression on the tSNPs (19). Cum freq, cumulative frequency; Freq, frequency.