TABLE 3

Family-based haplotype association analysis of PTPN22

HaplotypeSNP number
Frequency*HBAT
123456791011zP
H1CGTCCCATTT0.270−0.2530.80052
H2CGCCCCATCT0.264−3.0630.00219
H3GGCTCCCTCC0.1760.2130.83110
H4GCCTTTACCT0.1243.9460.000079
H5GCCTCTACCT0.1150.4600.645415
H6GGCTCTACCT0.0230.4300.667337
H7CGCTCTACCT0.015−0.1860.852684
  • *

    * Haplotypes with frequencies <0.01 were not listed.