TABLE 4

Replication of Mexican-American SNPs (P < 0.001) with non-100K Type 2 Diabetes GWAS results

Mexican American (dbSNP rs)Mexican American (chromosomes)Mexican American (position)*Mexican American (gene)Mexican American (1/2)Mexican American (P)Mexican American (OR)DGI (dbSNP rs)DGI (allele)DGI (chromosomes)DGI (position)*DGI (P)DGI (OR)HapMap (r2)
CEUASN
rs8196391233219640ACTN2C/T0.000221.611rs819639T12332196400.017311.194N/AN/A
rs15099571064280724EGR2A/G0.000840.652rs1509957G10642807240.008200.831N/AN/A
rs270568538058636GDNF/EGFLAMC/T0.000850.448rs270565C5380615290.014400.7661.0001.000
rs95143211111854649C/T0.000900.639rs7116022T111118561820.020570.8660.9640.910
  • *

    * Position in March 2006 University of California Santa Cruz build;

  • Affymetrix annotations;

  • allele 2 vs. 1. N/A, not applicable (i.e., identical SNP).